Cheap flights from Heraklion

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Heraklion Flight Information
Origin airport IATA code
HER

Sourcing the best flights from Heraklion on ebookers

If you’re seeking a flight from Heraklion, you can swiftly and easily find exactly what you’re looking for using ebookers. Our easy-to-use tool will let you select the destination and ideal travel dates to immediately see which routes and airlines are available. Have a preferred airline in mind for the trip? You can filter your ebookers search to see if they have flights from HER. For more bespoke options, you can also set your search for multiple destinations and flights that are refundable, so you can have the most relevant information in moments.

Getting the best deal on a cheap flight from HER

There are a few golden rules for keeping costs low when booking flights from Heraklion. The first thing to think about is being flexible on your travel dates. It can help to shift your departure by a day, or even a few hours, as prices can vary by significant amounts. Use ebookers to compare and contrast your options ahead of time, and you can make a savvy decision. Want more savings? If book the hotel at your chosen destination through ebookers while also arranging your flight from Heraklion, you can get a discount of up to 15% off the total price. For help on which pad to pick, you can make use of our snappy hotel descriptions, which are accompanied by useful photos.

Getting things going at your destination

With ebookers, you don’t just have access to the latest, constantly updated information on flights from HER. You can also get inspiration on the most interesting things to get up to when you’re there. Just check out our Things to Do tool and you’ll soon be drawing up an exciting itinerary. And if you’re keen to take in as much of the wider area as possible, you could also look into the best car hire deals and have your very own set of wheels waiting, so you can roam to your heart’s content.

Featured Hotels near Heraklion

GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel

5 out of 5
9, D. Beaufort Street Heraklion Crete Island
The price is €108 per night from 28 Dec to 29 Dec
€108
28 Dec - 29 Dec
includes taxes & fees
Our customers tell us that they can't get enough of the sightseeing around GDM Megaron Historical Monument Hotel. During your stay, you're just a quick walk from Heraklion Port. Enjoy features like free WiFi in public areas and free self-parking, plus a gym.
9.8/10 Exceptional! (1,001 reviews)
Lovely room and views. Helpful staff. Clean throughout.

Reviewed on 19 Dec 2025

Opens in a new windowGDM Megaron Historical Monument Hotel
Dom Boutique Hotel

Dom Boutique Hotel

4 out of 5
Almirou 14 Heraklion
Our customers tell us that they can't get enough of the helpful staff at Dom Boutique Hotel. During your stay, you're just a quick walk from Heraklion Town Hall. Enjoy features like free WiFi in public areas, plus a gym and a bar.
9.2/10 Wonderful! (326 reviews)
Great staff!

Reviewed on 22 Nov 2025

Opens in a new windowDom Boutique Hotel
Aquila Atlantis Hotel

Aquila Atlantis Hotel

5 out of 5
2 Ygias Street Heraklion Crete Island
The price is €104 per night from 28 Dec to 29 Dec
€104
28 Dec - 29 Dec
includes taxes & fees
Our customers tell us that they can't get enough of the sightseeing around Aquila Atlantis Hotel. During your stay, you're just a quick walk from Museum of the Battle for Crete and National Resistance. Free WiFi in public areas, free self-parking and a free manager's reception are available.
9/10 Wonderful! (996 reviews)
Room was clean, breakfast was excellent!!!

Reviewed on 8 Dec 2025

Opens in a new windowAquila Atlantis Hotel
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Atrion Hotel

Atrion Hotel

3 out of 5
9 Chronaki Street Heraklion Crete Island
The price is €73 per night from 27 Dec to 28 Dec
€73
27 Dec - 28 Dec
includes taxes & fees
The free breakfast at Atrion Hotel gets high marks from our customers. During your stay, you'll be connected to the convention centre and just a quick walk from Monastery of St. Peter and St. Paul. Free WiFi in public areas, a restaurant and a bar are available.
8.8/10 Excellent! (840 reviews)
Great place

Reviewed on 23 Dec 2025

Opens in a new windowAtrion Hotel
Sofia Hotel

Sofia Hotel

3 out of 5
57 Stadiou Str. Heraklion Crete Island
The price is €46 per night from 27 Dec to 28 Dec
€46
27 Dec - 28 Dec
includes taxes & fees
Our customers tell us that they can't get enough of the helpful staff at Sofia Hotel. During your stay, you'll be within walking distance of Heraklion Port. Features include free WiFi in public areas and free self-parking, plus a restaurant.
8.4/10 Very Good! (923 reviews)
The breakfast menu was decent but they did not provide enough bacon. Look like they ran out very shortly after opening at 7 am.

Reviewed on 20 Nov 2025

Opens in a new windowSofia Hotel
El Greco Hotel

El Greco Hotel

2 out of 5
4, Street 1821 Heraklion Crete Island
The price is €49 per night from 3 Jan to 4 Jan
€49
3 Jan - 4 Jan 2026
includes taxes & fees
Our customers tell us that they can't get enough of the helpful staff at El Greco Hotel. During your stay, you're just a quick walk from Heraklion Central Market. Enjoy features like free WiFi in public areas, plus a bar and breakfast (surcharge).
7.2/10 Good! (776 reviews)
Clean room, very friendly staff, all the necessary amenities and then some - shower, mini fridge, tv. Be sure to bring a European wall charger!

Reviewed on 17 Dec 2025

Opens in a new windowEl Greco Hotel
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Fare, taxes & fees: Fares were found on ebookers.com and are updated daily. They include all taxes and fees, except baggage fees.

Refunds/changes/cancellations: Itinerary changes, if permitted for the fare, will have a £25.00 / 45.00 Euro service fee charged by ebookers, plus any airline fare and tax increase that may be applicable.

Other conditions: Schedules, fares and rules are subject to change without notice. Seats are limited and may not be available on all flights/dates or in all markets. Fares will not be honored retroactively or in exchange for any wholly/partially unused ticket. Tickets are non-transferable and non-refundable. Fare rules are provided for the selected itinerary before booking.