Cheap flights from Heraklion

Many airlines offer flexible change policies

Earn BONUS+ rewardsOpens in a new window on top of your airline points

Enjoy exclusive promotions on the ebookers app!

Heraklion Flight Information
Origin airport IATA code
HER

Sourcing the best flights from Heraklion on ebookers

If you’re seeking a flight from Heraklion, you can swiftly and easily find exactly what you’re looking for using ebookers. Our easy-to-use tool will let you select the destination and ideal travel dates to immediately see which routes and airlines are available. Have a preferred airline in mind for the trip? You can filter your ebookers search to see if they have flights from HER. For more bespoke options, you can also set your search for multiple destinations and flights that are refundable, so you can have the most relevant information in moments.

Getting the best deal on a cheap flight from HER

There are a few golden rules for keeping costs low when booking flights from Heraklion. The first thing to think about is being flexible on your travel dates. It can help to shift your departure by a day, or even a few hours, as prices can vary by significant amounts. Use ebookers to compare and contrast your options ahead of time, and you can make a savvy decision. Want more savings? If book the hotel at your chosen destination through ebookers while also arranging your flight from Heraklion, you can get a discount of up to 15% off the total price. For help on which pad to pick, you can make use of our snappy hotel descriptions, which are accompanied by useful photos.

Getting things going at your destination

With ebookers, you don’t just have access to the latest, constantly updated information on flights from HER. You can also get inspiration on the most interesting things to get up to when you’re there. Just check out our Things to Do tool and you’ll soon be drawing up an exciting itinerary. And if you’re keen to take in as much of the wider area as possible, you could also look into the best car hire deals and have your very own set of wheels waiting, so you can roam to your heart’s content.

Featured Hotels near Heraklion

GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel

5 out of 5
9, D. Beaufort Street Heraklion Crete Island
The price is €180 per night from 1 Jun to 2 Jun
€180
per night
1 Jun - 2 Jun
Our customers tell us that they can't get enough of the sightseeing around GDM Megaron Historical Monument Hotel. During your stay, you're just a quick walk from Heraklion Port. Enjoy features like free WiFi in public areas and free self-parking, plus a gym.
9.8/10 Exceptional! (1,000 reviews)
Great hotel

Reviewed on 11 May 2026

Opens in a new windowGDM Megaron Historical Monument Hotel
Dom Boutique Hotel

Dom Boutique Hotel

4 out of 5
Almirou 14 Heraklion
The price is €135 per night from 29 May to 30 May
€135
per night
29 May - 30 May
Our customers tell us that they can't get enough of the helpful staff at Dom Boutique Hotel. During your stay, you're just a quick walk from Heraklion Archaeological Museum. Enjoy features like free WiFi in public areas, plus a gym and a bar.
9.4/10 Exceptional! (340 reviews)
Recently built, modern design, rooms well designed and equipped, excellent breakfast

Reviewed on 14 May 2026

Opens in a new windowDom Boutique Hotel
Aquila Atlantis Hotel

Aquila Atlantis Hotel

5 out of 5
2 Ygias Street Heraklion Crete Island
The price is €127 per night from 16 May to 17 May
€127
per night
16 May - 17 May
Our customers tell us that they can't get enough of the sightseeing around Aquila Atlantis Hotel. During your stay, you're just a quick walk from Heraklion Archaeological Museum. Free WiFi in public areas, free self-parking and a free manager's reception are available.
9/10 Wonderful! (1,001 reviews)
Great stay for its price, taxi to the port was 8€

Reviewed on 12 May 2026

Opens in a new windowAquila Atlantis Hotel
Save an average of 15% on thousands of hotels when you're signed in
Atrion Hotel

Atrion Hotel

3 out of 5
9 Chronaki Street Heraklion Crete Island
The price is €118 per night from 1 Jun to 2 Jun
€118
per night
1 Jun - 2 Jun
The free breakfast at Atrion Hotel gets high marks from our customers. During your stay, you'll be connected to the convention centre and just a quick walk from Heraklion Archaeological Museum. Free WiFi in public areas, a restaurant and a bar are available.
9/10 Wonderful! (878 reviews)
Very helpful staff. Room was clean and comfortable. Special mention to Athina in the restaurant ... super friendly and welcoming.

Reviewed on 8 May 2026

Opens in a new windowAtrion Hotel
Kronos Hotel

Kronos Hotel

2 out of 5
2, Sof. Venizelou Str. and M. Agarathou Heraklion Crete Island
The price is €77 per night from 16 May to 17 May
€77
per night
16 May - 17 May
Our customers tell us that they can't get enough of the helpful staff at Kronos Hotel. During your stay, you're just a quick walk from Heraklion Archaeological Museum. You'll find features such as free breakfast, free WiFi in public areas and free self-parking.
8.8/10 Excellent! (587 reviews)
The staff, especially Sylvia, was friendly and helpful. She gave good recommendations for restaurants. She also helped to arrange for a good tour and the taxi for leaving by the port. The hotel is in easy walking distance of the pedestrian ways in the city enter, albeit uphill. Of course, that means ...

Reviewed on 8 May 2026

Opens in a new windowKronos Hotel
Sofia Hotel

Sofia Hotel

3 out of 5
57 Stadiou Str. Heraklion Crete Island
The price is €78 per night from 17 May to 18 May
€78
per night
17 May - 18 May
Our customers tell us that they can't get enough of the helpful staff at Sofia Hotel. During your stay, you'll be within walking distance of Heraklion Port. Features include free WiFi in public areas and free self-parking, plus a restaurant.
8.6/10 Excellent! (953 reviews)
The staff were amazing. Very nice and kind. The breakfast was good. The beds were a little hard. Really good taverna restaurant nearby with traditional food. Great location to rent a car and walk from the airport to. Easy. Great stay for an airport transition to or from Heraklion. Quiet room despite ...

Reviewed on 8 May 2026

Opens in a new windowSofia Hotel
Don't see what you're looking for?
See all available properties in Heraklion
View all properties
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Fare, taxes & fees: Fares were found on ebookers.com and are updated daily. They include all taxes and fees, except baggage fees.

Refunds/changes/cancellations: Itinerary changes, if permitted for the fare, will have a £25.00 / 45.00 Euro service fee charged by ebookers, plus any airline fare and tax increase that may be applicable.

Other conditions: Schedules, fares and rules are subject to change without notice. Seats are limited and may not be available on all flights/dates or in all markets. Fares will not be honored retroactively or in exchange for any wholly/partially unused ticket. Tickets are non-transferable and non-refundable. Fare rules are provided for the selected itinerary before booking.